Ken Manheimer has also posted a proposal (a little bit dated) about what he calls 
Organization Objects, and a really good companion paper about the 
motivations for organization objects.  The motivations paper discusses how the parent/child and table of contents relationship(s) were done for ZWiki, and how Organization Objects (which bear similarity to 
XLink) would have benefited the application.
A bullet point in the Organization Objects proposal that I really liked is:
- Living with only links and searches is like living in an
     imaginary world where every room is connected to every other by
     transporters - it lacks a basis for regionality, neighborhood.     
 
 In other words, it lacks progressively grouped regions by which you
     can realize "where you are".